medsci-skills
Review Skills in Aperivue/medsci-skills, with license, maintenance context, and source paths.
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- 40
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- 237
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- medsci-skills
- Public sources
- 1
- License context
- MIT
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Agent Skills from medsci-skills
Repository stars and maintenance signals provide context, but do not automatically become an individual Skill's quality score.
Aperivue/medsci-skills
academic-aio
Medical AI paper optimization for AI search engines (Perplexity, ChatGPT web, Elicit, Consensus, SciSpace) and RAG-based literature tools. Applies when drafting or reviewing titles, abstracts, structured summary boxes (Key Points / Research in Context / Plain-Language Summary), manuscripts for high-impact medical AI journals (Lancet Digital Health, Radiology, Radiology-AI, npj Digital Medicine, Nature Medicine), preprints (medRxiv/arXiv), GitHub README + CITATION.cff + Zenodo archives, and Huggi
Aperivue/medsci-skills
analyze-stats
Statistical analysis for medical research papers. Generates reproducible Python/R code with publication-ready tables and figures. Supports diagnostic accuracy, inter-rater agreement, meta-analysis, survival analysis, survey data, group comparisons, regression, propensity score, and repeated measures.
Aperivue/medsci-skills
author-strategy
PubMed author profile analysis. Author name → PubMed fetch → study-type classification → visualization → strategy report → optional trajectory-archetype classification.
Aperivue/medsci-skills
batch-cohort
Generate N analysis scripts from a single methodology template × multiple exposure/outcome combinations. The "80-person team" pattern — same validated method, swap variables only. Produces batch R/Python code + summary matrix.
Aperivue/medsci-skills
calc-sample-size
Interactive sample size calculator for medical research. Decision-tree guided test selection, reproducible R/Python code, effect size interpretation, and IRB-ready justification text. Supports diagnostic accuracy, agreement, proportions, continuous outcomes, survival, ANOVA, logistic regression, and non-inferiority/equivalence designs.
Aperivue/medsci-skills
check-reporting
Check manuscript compliance with medical research reporting guidelines. Supports 47 guidelines including STROBE, STROBE-MR, RECORD, REMARK (prognostic tumor-marker studies), TARGET (target trial emulation), GATHER (burden-of-disease / health-estimate modeling), CONSORT, CONSORT-AI, STARD, STARD-AI, TRIPOD, TRIPOD+AI, TRIPOD-LLM, PGS-RS, ARRIVE, PRISMA, PRISMA-DTA, PRISMA-P, PRISMA-ScR (scoping reviews), CARE, SPIRIT, SPIRIT-AI, CLAIM, DECIDE-AI, MI-CLEAR-LLM, SQUIRE 2.0, CLEAR, MOOSE, GRRAS, SWi
Aperivue/medsci-skills
clean-data
Interactive data profiling and cleaning assistant for medical research. Three-stage workflow (profile, flag, code-generate) with user approval gates at each step. Handles missing values, outliers, duplicates, and type mismatches in CSV/Excel clinical data. Does NOT auto-clean — all decisions require researcher confirmation.
Aperivue/medsci-skills
cross-national
End-to-end cross-national comparison study using KNHANES + NHANES + CHNS (or other parallel surveys). Variable harmonization, parallel weighted analysis, and comparison tables. Supports 2-country (KR+US) and 3-country (KR+US+CN) designs.
Aperivue/medsci-skills
define-variables
Literature-grounded variable operationalization for observational research. Turns a data dictionary + research question into a citation-backed table of exposure/outcome/covariate definitions, cutoffs, and DB variable mappings. Prevents ad-hoc phenotype definitions that invite reviewer rejection. Bridges /search-lit output into /write-protocol Methods.
Aperivue/medsci-skills
design-ai-benchmarking
Design and validity review for studies that benchmark one or more AI systems against a human-expert panel as the reference. Covers the evaluation question and arm definition, decoupled multi-dimensional rubrics with anchors, planted calibration probes, reviewer-panel construction, inter-rater reliability targets, LLM-as-judge versus human-as-judge adjudication, construct-independence guards, and a structured rating-export schema. Use before data collection on an AI-vs-expert evaluation.
Aperivue/medsci-skills
design-study
Study design and validity review for radiology and medical AI research. Identifies analysis unit, cohort logic, leakage risks, comparator design, validation strategy, and reporting guideline fit before drafting or submission.
Aperivue/medsci-skills
explainability
Produce or audit the interpretability/explainability analysis of a medical-imaging model — Grad-CAM / Grad-CAM++ / attention-rollout / saliency / integrated-gradients — so it clears the rigor bar a reviewer expects: mandatory Adebayo sanity checks (model- and data-randomisation), a quantitative localisation metric against ground truth (IoU / pointing game / Dice) instead of eyeballed examples, a cohort-level result rather than cherry-picked cases, and attribution framing rather than "proof the m
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