Quick Start
Install the current stable Polars release verified during this refresh:
K-Dense-AI/scientific-agent-skills
High-performance DataFrame library for Python ETL, analytics, and pandas migration. Use for expression-based data manipulation with lazy query optimization, parallel execution, streaming out-of-core processing, Arrow interoperability, and optional GPU execution.
npx skills add https://github.com/K-Dense-AI/scientific-agent-skills --skill "skills/polars"Source checked Jul 28, 2026·Refresh due Oct 26, 2026
Reorganized from the pinned upstream SKILL.md
High-performance DataFrame library for Python ETL, analytics, and pandas migration. Use for expression-based data manipulation with lazy query optimization, parallel execution, streaming out-of-core processing, Arrow interoperability, and optional GPU execution.
npx skills add https://github.com/K-Dense-AI/scientific-agent-skills --skill "skills/polars"The pinned source contains enough sections and task detail for a source-grounded deep guide; automated content is still not an independent test.
1,159 source words · 56 usable sections
Analysis workflow
Sections are extracted automatically from the pinned SKILL.md and link back to the source.
Install the current stable Polars release verified during this refresh:
Install the current stable Polars release verified during this refresh:
df = pl.DataFrame({ "name": ["Alice", "Bob", "Charlie"], "age": [25, 30, 35], "city": ["NY", "LA", "SF"] })
df.select("name", "age")
df.filter(pl.col("age") 25)
SkillSignal prompt templates
These prompts were written by SkillSignal from the source structure; they are not upstream text.
Source-grounded prompt
Use for a data-analysis task while explicitly checking the source sections.
Use polars for this data-analysis task: [task]. Inputs and constraints: [details]. Work through these pinned SKILL.md sections: “Quick Start”, “Installation and Basic Usage”, “Create DataFrame”, “Select columns”, “Filter rows”. Cite the concrete requirements that shape each step, do not invent capabilities absent from the source, and verify the result against: [acceptance criteria].
Analysis checklist
The source section “Quick Start” has been checked.
The source section “Installation and Basic Usage” has been checked.
The source section “Create DataFrame” has been checked.
The source section “Select columns” has been checked.
Choose a different workflow
Distributed computing for larger-than-RAM pandas/NumPy workflows. Use when you need to scale existing pandas/NumPy code beyond memory or across clusters. Best for parallel file processing, distributed ML, integration with existing pandas code. For out-of-core analytics on single machine use vaex; for in-memory speed use polars.
A separate implementation from K-Dense-AI/scientific-agent-skills; compare its source, maintenance signals, and permission requirements.
Open source detailHigh-performance genomic interval operations and bioinformatics file I/O on Polars DataFrames. Overlap, nearest, merge, coverage, complement, subtract for BED/VCF/BAM/GFF intervals. Streaming, cloud-native, faster bioframe alternative.
A separate implementation from K-Dense-AI/scientific-agent-skills; compare its source, maintenance signals, and permission requirements.
Open source detailBenchling Python SDK and REST API integration for registry entities, inventory, ELN entries, workflows, Benchling Apps, and Data Warehouse queries. Use when automating lab data with benchling-sdk or the v2 API.
A separate implementation from K-Dense-AI/scientific-agent-skills; compare its source, maintenance signals, and permission requirements.
Open source detailFAQ
High-performance DataFrame library for Python ETL, analytics, and pandas migration. Use for expression-based data manipulation with lazy query optimization, parallel execution, streaming out-of-core processing, Arrow interoperability, and optional GPU execution.
The source record exposes this install command: npx skills add https://github.com/K-Dense-AI/scientific-agent-skills --skill "skills/polars". Inspect the command and pinned source before running it.
Quality breakdown
Based on traceable docs and repository signals; stars are not treated as quality.
Compare before choosing
These links are selected from shared tasks, functions, stacks, platforms, and same-name variants. Compare the source owner, documentation, permissions, and maintenance signals.
Distributed computing for larger-than-RAM pandas/NumPy workflows. Use when you need to scale existing pandas/NumPy code beyond memory or across clusters. Best for parallel file processing, distributed ML, integration with existing pandas code. For out-of-core analytics on single machine use vaex; for in-memory speed use polars.
High-performance genomic interval operations and bioinformatics file I/O on Polars DataFrames. Overlap, nearest, merge, coverage, complement, subtract for BED/VCF/BAM/GFF intervals. Streaming, cloud-native, faster bioframe alternative.
Benchling Python SDK and REST API integration for registry entities, inventory, ELN entries, workflows, Benchling Apps, and Data Warehouse queries. Use when automating lab data with benchling-sdk or the v2 API.
Use this skill for processing and analyzing large tabular datasets (billions of rows) that exceed available RAM. Vaex excels at out-of-core DataFrame operations, lazy evaluation, fast aggregations, efficient visualization of big data, and machine learning on large datasets. Apply when users need to work with large CSV/HDF5/Arrow/Parquet files, perform fast statistics on massive datasets, create visualizations of big data, or build ML pipelines that do not fit in memory.
Core Python library for astronomy and astrophysics workflows that need Astropy APIs, including units/quantities, coordinates, FITS I/O, tables, time systems, WCS, and cosmology. Use when implementing or debugging astronomical data analysis code with Astropy.
Polars is a lightning-fast DataFrame library for Python and Rust built on Apache Arrow. Work with Polars' expression-based API, lazy evaluation framework, and high-performance data manipulation capabilities for efficient data processing, pandas migration, and data pipeline optimization.
Install the current stable Polars release verified during this refresh:
uv pip install "polars==1.41.2"
Install optional integrations only when needed:
uv pip install "polars[excel,database,fsspec,pandas,numpy]==1.41.2"
Basic DataFrame creation and operations:
import polars as pl
# Create DataFrame
df = pl.DataFrame({
"name": ["Alice", "Bob", "Charlie"],
"age": [25, 30, 35],
"city": ["NY", "LA", "SF"]
})
# Select columns
df.select("name", "age")
# Filter rows
df.filter(pl.col("age") > 25)
# Add computed columns
df.with_columns(
age_plus_10=pl.col("age") + 10
)
Expressions are the fundamental building blocks of Polars operations. They describe transformations on data and can be composed, reused, and optimized.
Key principles:
pl.col("column_name") to reference columnsExample:
# Expression-based computation
df.select(
pl.col("name"),
(pl.col("age") * 12).alias("age_in_months")
)
Eager (DataFrame): Operations execute immediately
df = pl.read_csv("file.csv") # Reads immediately
result = df.filter(pl.col("age") > 25) # Executes immediately
Lazy (LazyFrame): Operations build a query plan, optimized before execution
lf = pl.scan_csv("file.csv") # Doesn't read yet
result = lf.filter(pl.col("age") > 25).select("name", "age")
df = result.collect() # Now executes optimized query
When to use lazy:
Benefits of lazy evaluation:
For detailed concepts, load references/core_concepts.md.
Select and manipulate columns:
# Select specific columns
df.select("name", "age")
# Select with expressions
df.select(
pl.col("name"),
(pl.col("age") * 2).alias("double_age")
)
# Select all columns matching a pattern
df.select(pl.col("^.*_id$"))
Filter rows by conditions:
# Single condition
df.filter(pl.col("age") > 25)
# Multiple conditions (cleaner than using &)
df.filter(
pl.col("age") > 25,
pl.col("city") == "NY"
)
# Complex conditions
df.filter(
(pl.col("age") > 25) | (pl.col("city") == "LA")
)
Add or modify columns while preserving existing ones:
# Add new columns
df.with_columns(
age_plus_10=pl.col("age") + 10,
name_upper=pl.col("name").str.to_uppercase()
)
# Parallel computation (all columns computed in parallel)
df.with_columns(
pl.col("value") * 10,
pl.col("value") * 100,
)
Group data and compute aggregations:
# Basic grouping
df.group_by("city").agg(
pl.col("age").mean().alias("avg_age"),
pl.len().alias("count")
)
# Multiple group keys
df.group_by("city", "department").agg(
pl.col("salary").sum()
)
# Conditional aggregations
df.group_by("city").agg(
(pl.col("age") > 30).sum().alias("over_30")
)
For detailed operation patterns, load references/operations.md.
Common aggregations within group_by context:
pl.len() - count rowspl.col("x").sum() - sum valuespl.col("x").mean() - averagepl.col("x").min() / pl.col("x").max() - extremespl.first() / pl.last() - first/last valuesover()Apply aggregations while preserving row count:
# Add group statistics to each row
df.with_columns(
avg_age_by_city=pl.col("age").mean().over("city"),
rank_in_city=pl.col("salary").rank().over("city")
)
# Multiple grouping columns
df.with_columns(
group_avg=pl.col("value").mean().over("category", "region")
)
Mapping strategies:
group_to_rows (default): Preserves original row orderexplode: Faster but groups rows togetherjoin: Creates list columnsPolars supports reading and writing:
CSV:
# Eager
df = pl.read_csv("file.csv")
df.write_csv("output.csv")
# Lazy (preferred for large files)
lf = pl.scan_csv("file.csv")
result = lf.filter(...).select(...).collect()
Parquet (recommended for performance):
df = pl.read_parquet("file.parquet")
df.write_parquet("output.parquet")
JSON:
df = pl.read_json("file.json")
df.write_json("output.json")
For comprehensive I/O documentation, load references/io_guide.md.
Combine DataFrames:
# Inner join
df1.join(df2, on="id", how="inner")
# Left join
df1.join(df2, on="id", how="left")
# Join on different column names
df1.join(df2, left_on="user_id", right_on="id")
Stack DataFrames:
# Vertical (stack rows)
pl.concat([df1, df2], how="vertical")
# Horizontal (add columns)
pl.concat([df1, df2], how="horizontal")
# Diagonal (union with different schemas)
pl.concat([df1, df2], how="diagonal")
Reshape data:
# Pivot (wide format)
df.pivot(on="product", values="sales", index="date")
# Unpivot (long format)
df.unpivot(index="id", on=["col1", "col2"])
For detailed transformation examples, load references/transformations.md.
Polars offers significant performance improvements over pandas with a cleaner API. Key differences:
| Operation | Pandas | Polars |
|---|---|---|
| Select column | df["col"] | df.select("col") |
| Filter | df[df["col"] > 10] | df.filter(pl.col("col") > 10) |
| Add column | df.assign(x=...) | df.with_columns(x=...) |
| Group by | df.groupby("col").agg(...) | df.group_by("col").agg(...) |
| Window | df.groupby("col").transform(...) | df.with_columns(...).over("col") |
Pandas sequential (slow):
df.assign(
col_a=lambda df_: df_.value * 10,
col_b=lambda df_: df_.value * 100
)
Polars parallel (fast):
df.with_columns(
col_a=pl.col("value") * 10,
col_b=pl.col("value") * 100,
)
For comprehensive migration guide, load references/pandas_migration.md.
Use lazy evaluation for large datasets:
lf = pl.scan_csv("large.csv") # Don't use read_csv
result = lf.filter(...).select(...).collect()
Avoid Python functions in hot paths:
.map_elements() only when necessaryUse streaming for very large data:
lf.collect(engine="streaming")
Select only needed columns early:
# Good: Select columns early
lf.select("col1", "col2").filter(...)
# Bad: Filter on all columns first
lf.filter(...).select("col1", "col2")
Use appropriate data types:
Conditional operations:
pl.when(condition).then(value).otherwise(other_value)
Column operations across multiple columns:
df.select(pl.col("^.*_value$") * 2) # Regex pattern
Null handling:
pl.col("x").fill_null(0)
pl.col("x").is_null()
pl.col("x").drop_nulls()
For additional best practices and patterns, load references/best_practices.md.
This skill includes comprehensive reference documentation:
core_concepts.md - Detailed explanations of expressions, lazy evaluation, and type systemoperations.md - Comprehensive guide to all common operations with examplespandas_migration.md - Complete migration guide from pandas to Polarsio_guide.md - Data I/O operations for all supported formatstransformations.md - Joins, concatenation, pivots, and reshaping operationsbest_practices.md - Performance optimization tips and common patternsLoad these references as needed when users require detailed information about specific topics.