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K-Dense-AI/scientific-agent-skills/skills/pytorch-lightning/SKILL.md

pytorch-lightning

Deep learning framework (PyTorch Lightning / lightning package). Organize PyTorch code into LightningModules, configure Trainers for multi-GPU/TPU, implement data pipelines, callbacks, logging (W&B, TensorBoard, MLflow), distributed training (DDP, FSDP, DeepSpeed), for scalable neural network training.

Source repository stars
31,966
Declared platforms
0
Static risk flags
0
Last source update
2026-07-28
Source checked
2026-07-28

Decision brief

What it does—and where it fits

Deep learning framework (PyTorch Lightning / lightning package). Organize PyTorch code into LightningModules, configure Trainers for multi-GPU/TPU, implement data pipelines, callbacks, logging (W&B, TensorBoard, MLflow), distributed training (DDP, FSDP, DeepSpeed), for scalable neural network training.

Best for

  • Building, training, or deploying neural networks using PyTorch Lightning
  • Organizing PyTorch code into LightningModules
  • Configuring Trainers for multi-GPU/TPU training

Not for

  • Tasks that require unconfirmed production actions or broad system permissions.
  • Environments where the pinned source and install steps cannot be inspected.

Compatibility matrix

Platform support, with evidence labels

PlatformStatusEvidenceWhat to check
CodexNot declaredNo explicit evidencePortability before use
Claude CodeNot declaredNo explicit evidencePortability before use
CursorNot declaredNo explicit evidencePortability before use
Gemini CLINot declaredNo explicit evidencePortability before use
Open the compatibility checker

Installation

Inspect first. Install second.

The source command is displayed only when detected. A safe inspection prompt is always available so your agent can explain every action before execution.

Source-detected install commandSource
npx skills add https://github.com/K-Dense-AI/scientific-agent-skills --skill "skills/pytorch-lightning"
Safe inspection promptEditorial

Inspect the Agent Skill "pytorch-lightning" from https://github.com/K-Dense-AI/scientific-agent-skills/blob/e7ac42510774624f327003c95b6650e2883bc01d/skills/pytorch-lightning/SKILL.md at commit e7ac42510774624f327003c95b6650e2883bc01d. List every install step, command, network request, credential, file read/write, external action, and rollback step. Explain whether it fits my task. Do not install or execute anything until I approve.

Workflow

What the source asks the agent to do

  1. 01

    Quick Workflow

    Define model:

    Define model:Prepare data:Train:
  2. 02

    Installation

    Review the “Installation” section in the pinned source before continuing.

    Review and apply the “Installation” source section.
  3. 03

    When to Use This Skill

    This skill should be used when: - Building, training, or deploying neural networks using PyTorch Lightning - Organizing PyTorch code into LightningModules - Configuring Trainers for multi-GPU/TPU training - Implementing data pipelines with LightningDataModules - Working with cal…

    Building, training, or deploying neural networks using PyTorch LightningOrganizing PyTorch code into LightningModulesConfiguring Trainers for multi-GPU/TPU training
  4. 04

    Core Capabilities

    Organize PyTorch models into six logical sections:

    Initialization - init() and setup()Training Loop - trainingstep(batch, batchidx)Validation Loop - validationstep(batch, batchidx)
  5. 05

    1. LightningModule - Model Definition

    Organize PyTorch models into six logical sections:

    Initialization - init() and setup()Training Loop - trainingstep(batch, batchidx)Validation Loop - validationstep(batch, batchidx)

Permission review

Static risk signals and limitations

No configured static risk pattern was detected

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Evidence record

Why each signal appears

EvidenceSourceComputedTestedEditorial
SignalValueEvidence typeMeaning
Quality score86/100ComputedDocumentation, specificity, maintenance, and trust rules
Repository stars31,966SourceRepository attention, not individual Skill quality
Compatibility0 platformsSourceDeclared in the catalog source record
Usage guideautomated source guideEditorialGenerated or reviewed according to the visible evidence level

Pinned source

Provenance and original SKILL.md

Repository
K-Dense-AI/scientific-agent-skills
Skill path
skills/pytorch-lightning/SKILL.md
Commit
e7ac42510774624f327003c95b6650e2883bc01d
License
MIT
Collected
2026-07-28
Default branch
main
View the original SKILL.md

PyTorch Lightning

Overview

PyTorch Lightning is a deep learning framework that organizes PyTorch code to eliminate boilerplate while maintaining full flexibility. Automate training workflows, multi-device orchestration, and implement best practices for neural network training and scaling across multiple GPUs/TPUs.

Current upstream: lightning 2.6.4 (PyPI, May 2026). Docs: lightning.ai/docs/pytorch/stable. Use import lightning as L (the pytorch-lightning package name still installs the same library).

Installation

uv pip install lightning

Optional extras:

uv pip install lightning[extra]    # loggers, strategies, etc.
uv pip install wandb mlflow        # specific loggers as needed

When to Use This Skill

This skill should be used when:

  • Building, training, or deploying neural networks using PyTorch Lightning
  • Organizing PyTorch code into LightningModules
  • Configuring Trainers for multi-GPU/TPU training
  • Implementing data pipelines with LightningDataModules
  • Working with callbacks, logging, and distributed training strategies (DDP, FSDP, DeepSpeed)
  • Structuring deep learning projects professionally

Core Capabilities

1. LightningModule - Model Definition

Organize PyTorch models into six logical sections:

  1. Initialization - __init__() and setup()
  2. Training Loop - training_step(batch, batch_idx)
  3. Validation Loop - validation_step(batch, batch_idx)
  4. Test Loop - test_step(batch, batch_idx)
  5. Prediction - predict_step(batch, batch_idx)
  6. Optimizer Configuration - configure_optimizers()

Quick template reference: See scripts/template_lightning_module.py for a complete boilerplate.

Detailed documentation: Read references/lightning_module.md for comprehensive method documentation, hooks, properties, and best practices.

2. Trainer - Training Automation

The Trainer automates the training loop, device management, gradient operations, and callbacks. Key features:

  • Multi-GPU/TPU support with strategy selection (DDP, FSDP, DeepSpeed)
  • Automatic mixed precision training
  • Gradient accumulation and clipping
  • Checkpointing and early stopping
  • Progress bars and logging

Quick setup reference: See scripts/quick_trainer_setup.py for common Trainer configurations.

Detailed documentation: Read references/trainer.md for all parameters, methods, and configuration options.

3. LightningDataModule - Data Pipeline Organization

Encapsulate all data processing steps in a reusable class:

  1. prepare_data() - Download and process data (single-process)
  2. setup() - Create datasets and apply transforms (per-GPU)
  3. train_dataloader() - Return training DataLoader
  4. val_dataloader() - Return validation DataLoader
  5. test_dataloader() - Return test DataLoader

Quick template reference: See scripts/template_datamodule.py for a complete boilerplate.

Detailed documentation: Read references/data_module.md for method details and usage patterns.

4. Callbacks - Extensible Training Logic

Add custom functionality at specific training hooks without modifying your LightningModule. Built-in callbacks include:

  • ModelCheckpoint - Save best/latest models
  • EarlyStopping - Stop when metrics plateau
  • LearningRateMonitor - Track LR scheduler changes
  • BatchSizeFinder - Auto-determine optimal batch size

Detailed documentation: Read references/callbacks.md for built-in callbacks and custom callback creation.

5. Logging - Experiment Tracking

Integrate with multiple logging platforms:

  • TensorBoard (default)
  • Weights & Biases (WandbLogger)
  • MLflow (MLFlowLogger)
  • Comet (CometLogger)
  • CSV (CSVLogger)

Note: NeptuneLogger was removed in lightning 2.6.4. Use W&B, MLflow, or TensorBoard instead.

Log metrics using self.log("metric_name", value) in any LightningModule method.

Detailed documentation: Read references/logging.md for logger setup and configuration.

6. Distributed Training - Scale to Multiple Devices

Choose the right strategy based on model size:

  • DDP - For models <500M parameters (ResNet, smaller transformers)
  • FSDP - For models 500M+ parameters (large transformers, recommended for Lightning users)
  • DeepSpeed - For cutting-edge features and fine-grained control

Configure with: Trainer(strategy="ddp", accelerator="gpu", devices=4)

Detailed documentation: Read references/distributed_training.md for strategy comparison and configuration.

7. Best Practices

  • Device agnostic code - Use self.device instead of .cuda()
  • Hyperparameter saving - Use self.save_hyperparameters() in __init__()
  • Metric logging - Use self.log() for automatic aggregation across devices
  • Reproducibility - Use seed_everything() and Trainer(deterministic=True)
  • Debugging - Use Trainer(fast_dev_run=True) to test with 1 batch

Detailed documentation: Read references/best_practices.md for common patterns and pitfalls.

Quick Workflow

  1. Define model:

    class MyModel(L.LightningModule):
        def __init__(self):
            super().__init__()
            self.save_hyperparameters()
            self.model = YourNetwork()
    
        def training_step(self, batch, batch_idx):
            x, y = batch
            loss = F.cross_entropy(self.model(x), y)
            self.log("train_loss", loss)
            return loss
    
        def configure_optimizers(self):
            return torch.optim.Adam(self.parameters())
    
  2. Prepare data:

    # Option 1: Direct DataLoaders
    train_loader = DataLoader(train_dataset, batch_size=32)
    
    # Option 2: LightningDataModule (recommended for reusability)
    dm = MyDataModule(batch_size=32)
    
  3. Train:

    trainer = L.Trainer(max_epochs=10, accelerator="gpu", devices=2)
    trainer.fit(model, train_loader)  # or trainer.fit(model, datamodule=dm)
    

Resources

scripts/

Executable Python templates for common PyTorch Lightning patterns:

  • template_lightning_module.py - Complete LightningModule boilerplate
  • template_datamodule.py - Complete LightningDataModule boilerplate
  • quick_trainer_setup.py - Common Trainer configuration examples

references/

Detailed documentation for each PyTorch Lightning component:

  • lightning_module.md - Comprehensive LightningModule guide (methods, hooks, properties)
  • trainer.md - Trainer configuration and parameters
  • data_module.md - LightningDataModule patterns and methods
  • callbacks.md - Built-in and custom callbacks
  • logging.md - Logger integrations and usage
  • distributed_training.md - DDP, FSDP, DeepSpeed comparison and setup
  • best_practices.md - Common patterns, tips, and pitfalls

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